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CZECH TECHNICAL UNIVERSITY IN PRAGUE
STUDY PLANS
2018/2019

Biomedical Data Storage and Presentation

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Code Completion Credits Range Language
17AMPUPD KZ 2 0P+2C
Lecturer:
Tutor:
Supervisor:
Department of Biomedical Informatics
Synopsis:

The aim of the course is to introduce principles of biomedical data storage and presentation. This course also includes biomedical data format and storage, basic principles of data manipulation, analysis, design and implementation of database, tools for data management during SW development, XML, importance and basics of data visualization and presentation, tools, methods and techniques for biomedical data visualization and presentation. Advanced students will work on individual projects.

Requirements:
Syllabus of lectures:

1.Introduction to databases. Formats of biomedical data.

2.Relational database - design.

3.Relational database - normalization.

4.Relational database - query language SQL.

5.Relational database - transaction.

6.Relational database - stored procedure, trigger.

7.SW data access - ORM, antipaterns.

8.Alternatives - NoSQL, object database, RDF, XML.

9.XML query languages - XPath, XQuery, XSLT.

10.Introduction to visualization and presentation.

11.Tools for data visualization.

12.Tools for data presentation.

13.Stream database.

14.Database cloud.

Syllabus of tutorials:

1.Biomedical data formats.

2.Relational database - analysis and design.

3.Relational database - implementation.

4.Relational database - basic operations (CRUD).

5.Relational database - advanced operations.

6.Relational database - stored procedure, trigger.

7.Relational database - ORM.

8.XML - XML, DTD, XML Schema.

9.XML - XPath, XQuery, XSLT.

10.Web visualization - tools, libraries.

11.Web presentation - basics, tools.

12.Web presentation - implementation.

13.Web presentation - implementation.

14.Homework presentation and assessment.

Study Objective:
Study materials:
Note:
Time-table for winter semester 2018/2019:
Time-table is not available yet
Time-table for summer semester 2018/2019:
Time-table is not available yet
The course is a part of the following study plans:
Data valid to 2019-08-20
For updated information see http://bilakniha.cvut.cz/en/predmet4858506.html